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Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

112 followers
Basel, Switzerland
https://www.bsse.ethz.ch/cbg
@cbg_ethz

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V-pipe V-pipe Public

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Jupyter Notebook 147 46

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Showing 10 of 120 repositories

sr2silo Public
Wrangling short-read sequencing data for import into SILO

cbg-ethz/sr2silo's past year of commit activity

Python 1 MIT 2 8 9 Updated Oct 6, 2026
RSV-wastewater-V-pipe Public
Wastewater-derived Respiratory Syncytial Virus data analysis

cbg-ethz/RSV-wastewater-V-pipe's past year of commit activity

Python 0 Apache-2.0 0 0 0 Updated Oct 5, 2026
RSV-wastewater-2024-2025 Public
Computational analysis of wastewater-derived Respiratory Syncytial Virus (RSV) data collected during the 2024–2025 season in Switzerland.

cbg-ethz/RSV-wastewater-2024-2025's past year of commit activity

Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 5, 2026
WisePulse Public
WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

cbg-ethz/WisePulse's past year of commit activity

Rust 5 MIT 0 36 4 Updated Oct 5, 2026
cowwid Public
Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

cbg-ethz/cowwid's past year of commit activity

Jupyter Notebook 7 0 3 3 Updated Oct 1, 2026
pangolin Public
BSSE COVID-19 sequencing of test swab samples

cbg-ethz/pangolin's past year of commit activity

Shell 7 3 0 1 Updated Oct 1, 2026
SC-Bulk-Domain-Adaptation Public

cbg-ethz/SC-Bulk-Domain-Adaptation's past year of commit activity

Python 2 MIT 0 0 0 Updated Sep 29, 2026
scClone2DR Public
scClone2DR project

cbg-ethz/scClone2DR's past year of commit activity

Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Sep 27, 2026
MTBP_Numerics Public

cbg-ethz/MTBP_Numerics's past year of commit activity

C++ 0 MIT 0 0 0 Updated Sep 7, 2026
scReliability_paper Public

cbg-ethz/scReliability_paper's past year of commit activity

Python 4 MIT 0 0 0 Updated Sep 7, 2026

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cancer-genomics bioinformatics clustering genomics python

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