VIBTOBIlab
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Repositories
- BenchmarkingAnalysis Public
Repository containing scripts and tutorials to reproduce the benchmarking results.
- DecoNFlow Public
DecoNFlow is a bioinformatics analysis pipeline used for computational deconvolution of DNA methylation data. It allows deconvolution of samples using both reference-based and reference-free deconvolution tools.
- scRNAseq_InVitro_ImmuneStimulation Public
This repository encloses necessary code supporting the manuscript entitled "Stimulation strategy matters: A B-cell focused single-cell transcriptomic study on in vitro stimulated immune cells".
- methurator Public
Methurator is a Python package designed to estimate CpGs saturation for DNA methylation sequencing data.
- Sillymix Public
Sillymix is a bioinformatics analysis pipeline used to perform in-silico mixtures of tumoral and healthy fastq files at specified sequencing depth (in number of reads) and tumoral fractions.
- VIBTOBIlab.github.io Public
- Shiny-DNAmBenchmarking Public
Shiny Application for DNAmBenchmarking paper doi: 10.1101/2025.11.27.688590
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